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Deep Learning Library for Single Cell Analysis
IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
📊 A universal enrichment tool for interpreting omics data
An R package implementing the UMAP dimensionality reduction method.
Companion repository for the paper 'Compensation of signal spillover in suspension and imaging mass cytometry'
A toolkit for processing multiplexed tissue images
Imaging Mass Cytometry (IMC) file type support for napari
We're RLadies and we're from Bergen, Norway. Checkout the current info on meetup (https://www.meetup.com/rladies-bergen/)
Rphenograph: R implementation of the PhenoGraph algorithm
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
cytofkit: an integrated flow/mass cytometry data analysis pipeline
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.
A quality control analysis tool for high throughput sequencing data
🍺 The missing package manager for macOS (or Linux)
Graph-based alignment (Hierarchical Graph FM index)
Histology Topography Cytometry Analysis Toolbox
CellProfiler plugins for multiplexed image analysis
An open-source application for biological image analysis