forked from huangyh09/pyseqlib
-
Notifications
You must be signed in to change notification settings - Fork 0
/
setup.py
73 lines (55 loc) · 2.17 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
"""
pySeqLib: A small python library to process sequencing data.
"""
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path
from Cython.Build import cythonize
here = path.abspath(path.dirname(__file__))
# Set __version__ for the project.
exec(open("./pyseqlib/version.py").read())
# Get the long description from the relevant file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
long_description = f.read()
reqs = ['pysam', 'Cython', 'numpy']
setup(
name='pyseqlib',
# Versions should comply with PEP440. For a discussion on single-sourcing
# the version across setup.py and the project code, see
# https://packaging.python.org/en/latest/single_source_version.html
version=__version__,
description='pySeqLib: A small python library to process sequencing data.',
long_description=long_description,
# The project's main homepage.
url='https://github.com/huangyh09/pyseqlib',
# Author details
author='Yuanhua Huang',
author_email='yuanhua@ebi.ac.uk',
# Choose your license
license='Apache-2.0',
# What does your project relate to?
keywords=['sequencing data processing'],
# You can just specify the packages manually here if your project is
# simple. Or you can use find_packages().
packages=find_packages(),#[''],#
ext_modules=cythonize('pyseqlib/utils/*.pyx'),
entry_points={
'console_scripts': [
'pymfold = pyseqlib.pymfold:main',
'pyRNAfold = pyseqlib.pyRNAfold:main',
'intronX = pyseqlib.intronX.intronX:main',
'lariat-map = pyseqlib.lariat_map:main',
'motif-score = pyseqlib.motif_score:main',
],
},
# List run-time dependencies here. These will be installed by pip when
# your project is installed. For an analysis of "install_requires" vs pip's
# requirements files see:
# https://packaging.python.org/en/latest/requirements.html
install_requires=reqs,
py_modules = ['pyseqlib']
# buid the distribution: python setup.py sdist
# upload to pypi: twine upload dist/...
)