Protein-ligand structure prediction

Public RFDiffusionAA repo

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

The Rosetta Bio-macromolecule modeling package.

VACmap: a long-read aligner specifically designed for complex structural variation discovery

Interactive graph visualizations with Python and HTML/CSS/JS.

Odoo. Open Source Apps To Grow Your Business.

A new markup-based typesetting system that is powerful and easy to learn.

ChiBio primary operating system.

ZotMeta is a Zotero plugin to update existing articles/books metadata.

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Rapid Annotation Transfer Tool

Webserver and command line tool for annotating engineered plasmids

A list of interesting genome browser or genome-browser-like implementations

Learn and understand Docker&Container technologies, with real DevOps practice!

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

⚡ ♒ Rapid prokaryotic genome annotation

Foldseek enables fast and sensitive comparisons of large structure sets.

Whole Cell Model of E. coli

Read chromatography and mass spectrometry binary files.

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)

An advanced singing voice synthesis system with high fidelity, expressiveness, controllability and flexibility based on DiffSinger: Singing Voice Synthesis via Shallow Diffusion Mechanism

Python Data Science Handbook: full text in Jupyter Notebooks

Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have differ…