{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":668254277,"defaultBranch":"master","name":"ProDy","ownerLogin":"fdoljanin","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2023-07-19T11:31:36.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/73669815?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1722186776.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"139930969f650beaf82c2c012013941ca83aeb37","ref":"refs/heads/fixing_waterBridges_zeroHydrogen","pushedAt":"2024-07-28T17:12:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"fix zero hydrogen handling in water bridges","shortMessageHtmlLink":"fix zero hydrogen handling in water bridges"}},{"before":"f38e591cc47696972b10a304b8adee1815ac5e34","after":"ed88515cdaffb8f6ed15bc5d8dbdd52ce05519b1","ref":"refs/heads/master","pushedAt":"2024-07-28T15:21:21.000Z","pushType":"push","commitsCount":739,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Merge pull request #1872 from jamesmkrieger/adp_matrix\n\nfix adp matrix","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2248699981\" data-permission-text=\"Title is private\" data-url=\"https://github.com/prody/ProDy/issues/1872\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/prody/ProDy/pull/1872/hovercard\" href=\"https://github.com/prody/ProDy/pull/1872\">prody#1872</a> from jamesmkrieger/adp_matrix"}},{"before":null,"after":"73ef8281924913f9c1d1e1b75b6f6db73ff0daba","ref":"refs/heads/fixing_waterbridges_duplicates","pushedAt":"2023-09-13T01:14:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Fixed duplicates in stats","shortMessageHtmlLink":"Fixed duplicates in stats"}},{"before":"1f25d12afd0f210a45fc4e558fc9408098b1f59a","after":"f38e591cc47696972b10a304b8adee1815ac5e34","ref":"refs/heads/master","pushedAt":"2023-08-19T13:40:04.000Z","pushType":"push","commitsCount":39,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Merge pull request #1734 from jamesmkrieger/prody-master\n\nfix secstr writing","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1846940326\" data-permission-text=\"Title is private\" data-url=\"https://github.com/prody/ProDy/issues/1734\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/prody/ProDy/pull/1734/hovercard\" href=\"https://github.com/prody/ProDy/pull/1734\">prody#1734</a> from jamesmkrieger/prody-master"}},{"before":"6fad94be82bd656a52694d04ebde154e2da6219b","after":"1f25d12afd0f210a45fc4e558fc9408098b1f59a","ref":"refs/heads/master","pushedAt":"2023-08-10T10:27:24.000Z","pushType":"push","commitsCount":31,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Merge pull request #1727 from fdoljanin/water_bridging\n\nWater bridging module","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1844864570\" data-permission-text=\"Title is private\" data-url=\"https://github.com/prody/ProDy/issues/1727\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/prody/ProDy/pull/1727/hovercard\" href=\"https://github.com/prody/ProDy/pull/1727\">prody#1727</a> from fdoljanin/water_bridging"}},{"before":"939b94e719fd07bc8b615e81684fde99001671ab","after":null,"ref":"refs/heads/water_bridging","pushedAt":"2023-08-10T10:27:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"}},{"before":"ffa00d788deae864d95c8f11047f1b3649ac830c","after":"939b94e719fd07bc8b615e81684fde99001671ab","ref":"refs/heads/water_bridging","pushedAt":"2023-08-10T09:38:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Description for traj added","shortMessageHtmlLink":"Description for traj added"}},{"before":"92d49464fdd9ae36a10caa6055ab3f568ea3ccfe","after":"ffa00d788deae864d95c8f11047f1b3649ac830c","ref":"refs/heads/water_bridging","pushedAt":"2023-08-10T09:31:06.000Z","pushType":"push","commitsCount":187,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Merge branch 'prody:master' into water_bridging","shortMessageHtmlLink":"Merge branch 'prody:master' into water_bridging"}},{"before":"6fae7306446ef6c8a4501d7343fb0a6e3cefe073","after":"6fad94be82bd656a52694d04ebde154e2da6219b","ref":"refs/heads/master","pushedAt":"2023-08-10T09:30:38.000Z","pushType":"push","commitsCount":186,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Merge pull request #1705 from jamesmkrieger/cif_header\n\ncif header custom keys and unobserved","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1752692718\" data-permission-text=\"Title is private\" data-url=\"https://github.com/prody/ProDy/issues/1705\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/prody/ProDy/pull/1705/hovercard\" href=\"https://github.com/prody/ProDy/pull/1705\">prody#1705</a> from jamesmkrieger/cif_header"}},{"before":"5a1a1be433b352902e9ffe36e5d02e7cd4a9c757","after":"92d49464fdd9ae36a10caa6055ab3f568ea3ccfe","ref":"refs/heads/water_bridging","pushedAt":"2023-08-03T17:35:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Added option of saving water bridges","shortMessageHtmlLink":"Added option of saving water bridges"}},{"before":"e486dbe79bab0d5112a10ba1d18f8c451d049db3","after":"5a1a1be433b352902e9ffe36e5d02e7cd4a9c757","ref":"refs/heads/water_bridging","pushedAt":"2023-08-03T10:52:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Added output method conversions","shortMessageHtmlLink":"Added output method conversions"}},{"before":"b6480ad5d2b2707aa4a94749c5b8a566c98dfc21","after":"e486dbe79bab0d5112a10ba1d18f8c451d049db3","ref":"refs/heads/water_bridging","pushedAt":"2023-08-03T08:36:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Stats output added","shortMessageHtmlLink":"Stats output added"}},{"before":"a73d71bcef9a1cf5ce3740f2606335ca7e707092","after":"b6480ad5d2b2707aa4a94749c5b8a566c98dfc21","ref":"refs/heads/water_bridging","pushedAt":"2023-08-03T07:12:17.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Removed typecheck for bridgematrix","shortMessageHtmlLink":"Removed typecheck for bridgematrix"}},{"before":"f7b093aed5856ea7e821a88e2bda9271bd639c08","after":"a73d71bcef9a1cf5ce3740f2606335ca7e707092","ref":"refs/heads/water_bridging","pushedAt":"2023-08-02T21:37:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Removed typecheck for bridgematrix","shortMessageHtmlLink":"Removed typecheck for bridgematrix"}},{"before":"50311885eb539ded0fa0322dc9e8373c5911d09d","after":"f7b093aed5856ea7e821a88e2bda9271bd639c08","ref":"refs/heads/water_bridging","pushedAt":"2023-08-02T12:01:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Save bridges for multimodal and matrix data returned","shortMessageHtmlLink":"Save bridges for multimodal and matrix data returned"}},{"before":"d49f024e53d933eea9467d0dd4017ae91a4c3d60","after":"50311885eb539ded0fa0322dc9e8373c5911d09d","ref":"refs/heads/water_bridging","pushedAt":"2023-08-01T15:39:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Beta column modification","shortMessageHtmlLink":"Beta column modification"}},{"before":"35609705a5e42f9cc36187a8346067066ed82e7e","after":"d49f024e53d933eea9467d0dd4017ae91a4c3d60","ref":"refs/heads/water_bridging","pushedAt":"2023-08-01T13:29:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Matrix analysis and occupancy bugfix","shortMessageHtmlLink":"Matrix analysis and occupancy bugfix"}},{"before":"8aa1dd7d696e51d3d13b5204742f11d29718d494","after":"35609705a5e42f9cc36187a8346067066ed82e7e","ref":"refs/heads/water_bridging","pushedAt":"2023-08-01T12:32:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Distance std added","shortMessageHtmlLink":"Distance std added"}},{"before":"be050ef97984c4e50e7bf5fdcd98f46956c2982f","after":"8aa1dd7d696e51d3d13b5204742f11d29718d494","ref":"refs/heads/water_bridging","pushedAt":"2023-07-31T11:49:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Added descriptions to some methods","shortMessageHtmlLink":"Added descriptions to some methods"}},{"before":"59aa374686a72810342e924b5a5cf332e7d8942d","after":"be050ef97984c4e50e7bf5fdcd98f46956c2982f","ref":"refs/heads/water_bridging","pushedAt":"2023-07-31T10:32:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Bridges saving per trajectory","shortMessageHtmlLink":"Bridges saving per trajectory"}},{"before":"5b2af543f7322145bba0b1b8c8f6516d5a0d549f","after":"59aa374686a72810342e924b5a5cf332e7d8942d","ref":"refs/heads/water_bridging","pushedAt":"2023-07-31T09:51:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Bugfix and additional analysis","shortMessageHtmlLink":"Bugfix and additional analysis"}},{"before":"764f705049329ef6ce9917ca3ab3c0cb0a18d1ab","after":"5b2af543f7322145bba0b1b8c8f6516d5a0d549f","ref":"refs/heads/water_bridging","pushedAt":"2023-07-30T00:12:21.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Added additional stats\n\nBug - need to replace static atoms with those from trajectory files","shortMessageHtmlLink":"Added additional stats"}},{"before":"a2cf5ad7f234d8bbb3087e70d6fadc69b7461f70","after":"764f705049329ef6ce9917ca3ab3c0cb0a18d1ab","ref":"refs/heads/water_bridging","pushedAt":"2023-07-27T10:23:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Occupancy not binary, water saving bug fix","shortMessageHtmlLink":"Occupancy not binary, water saving bug fix"}},{"before":"aedfc07fc00d1c9513fa63fbb3b1a5111ad61eeb","after":"a2cf5ad7f234d8bbb3087e70d6fadc69b7461f70","ref":"refs/heads/water_bridging","pushedAt":"2023-07-26T09:42:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Cleaning","shortMessageHtmlLink":"Cleaning"}},{"before":"4504660cc119062635e5f58baa8e78cfb47cfa1c","after":"aedfc07fc00d1c9513fa63fbb3b1a5111ad61eeb","ref":"refs/heads/water_bridging","pushedAt":"2023-07-25T13:22:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Save bridges PDB, filter frequent interactors","shortMessageHtmlLink":"Save bridges PDB, filter frequent interactors"}},{"before":"d89c1287a314bd2255f05916b8a30e0d910c6d36","after":"4504660cc119062635e5f58baa8e78cfb47cfa1c","ref":"refs/heads/water_bridging","pushedAt":"2023-07-24T12:57:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Interaction analysis","shortMessageHtmlLink":"Interaction analysis"}},{"before":"d5ad58224241ce0459409a85deff4e9c6f8cb27c","after":"d89c1287a314bd2255f05916b8a30e0d910c6d36","ref":"refs/heads/water_bridging","pushedAt":"2023-07-24T10:43:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Added output methods and new cluster constraints","shortMessageHtmlLink":"Added output methods and new cluster constraints"}},{"before":"c63dd95a357822cebb4527fbeb883a522b196d38","after":"d5ad58224241ce0459409a85deff4e9c6f8cb27c","ref":"refs/heads/water_bridging","pushedAt":"2023-07-21T11:18:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Hydrogen angle fix","shortMessageHtmlLink":"Hydrogen angle fix"}},{"before":"c680747020b582bd44130178c9b4d98a8bcf1b7c","after":"c63dd95a357822cebb4527fbeb883a522b196d38","ref":"refs/heads/water_bridging","pushedAt":"2023-07-21T10:18:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Further performance improvements","shortMessageHtmlLink":"Further performance improvements"}},{"before":"6fd4c6f83b8792d733636dc7ab722d305485b17a","after":"c680747020b582bd44130178c9b4d98a8bcf1b7c","ref":"refs/heads/water_bridging","pushedAt":"2023-07-21T09:00:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"fdoljanin","name":"Frane Doljanin","path":"/fdoljanin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/73669815?s=80&v=4"},"commit":{"message":"Added trajectory","shortMessageHtmlLink":"Added trajectory"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0yOFQxNzoxMjo1Ni4wMDAwMDBazwAAAASLPlPY","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0yOFQxNzoxMjo1Ni4wMDAwMDBazwAAAASLPlPY","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wNy0yMVQwOTowMDozMC4wMDAwMDBazwAAAANaP325"}},"title":"Activity · fdoljanin/ProDy"}