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read.ortholog.table.R
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read.ortholog.table.R
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read.ortholog.table <- function(file) {
res <- readr::read_delim(
file,
col_names = TRUE,
delim = ";",
col_types = readr::cols(
"query_species" = readr::col_character(),
"subject_species" = readr::col_character(),
"query_id" = readr::col_character(),
"query_gene_locus_id" = readr::col_character(),
"subject_id" = readr::col_character(),
"subject_gene_locus_id" = readr::col_character(),
"dN" = readr::col_double(),
"dS" = readr::col_double(),
"dNdS" = readr::col_double(),
"evalue" = readr::col_double(),
"bit_score" = readr::col_double(),
"perc_identity" = readr::col_double(),
"alig_length" = readr::col_integer(),
"mismatches" = readr::col_integer(),
"gap_openings" = readr::col_integer(),
"q_start" = readr::col_integer(),
"q_end" = readr::col_integer(),
"s_start" = readr::col_integer(),
"s_end" = readr::col_integer()
)
)
return(res)
}