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clm4_0_ChangeLog
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===============================================================
Tag name: clm4_0_81
Originator(s): bandre (Benjamin Andre)
Date: Mon Apr 29 12:12:42 MDT 2013
One-line Summary: Charlie Koven's variable consolidation, cryoturbation and BSW CPP changes
Purpose of changes:
1) variable consolidation -- these are all things like adding up
the leafc_to_litr1c, stemc_tolitr1c, frootc_to_litr1c, etc. into a
single set of fluxes, e.g. phenology_c_to_litr_met_c. this
introduces roundoff-level differences in every calculation of C
and N from plants to litter, so it will propagate quickly to
everywhere in the CN and CN4Me code.
2) cryoturbation - the changes to the active layer profiles. This
should have a real but minor effect everywhere where there is
permafrost, because it will change the mixing rates of all soil
material into and out of the permafrost. However, this is so slow
that it should only really matter during spinup.
3) BSW bugfix - Remove the STNDRD_BSW_FOR_SOILPSI_CALC CPP
token. This had already been set in the CN4Me code, but will cause
real changes to both the drought phenology and frozen temperature
sensitivity of the CN code.
Requirements for tag:
Test level of tag: std-test
Bugs fixed (include bugzilla ID): N/A
Known bugs (include bugzilla ID): N/A
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system:
remove the CPP flag for STNDRD_BSW_FOR_SOILPSI_CALC
Describe any changes made to the namelist:
remove: shape_fluxprof, max_altmultiplier_cryoturb, max_altdepth_cryoturbation
add: max_altdepth_cryoturbation, max_depth_cryoturb
List any changes to the defaults for the boundary datasets: N/A
Describe any substantial timing or memory changes: variable consolidation should decrease runtime
Code reviewed by: Charlie Koven
List any svn externals directories updated (csm_share, mct, etc.): N/A
List all files eliminated: N/A
List all files added and what they do: N/A
List all existing files that have been modified, and describe the changes:
- remove configure option for BSW
M models/lnd/clm/bld/configure
M models/lnd/clm/bld/config_files/config_definition.xml
- remove of BSW ifdef
M models/lnd/clm/src/clm4_5/biogeochem/CNDecompCascadeMod_BGC.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNDecompCascadeMod_CENTURY.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNSetValueMod.F90
M models/lnd/clm/src/clm4_5/main/clmtypeInitMod.F90
M models/lnd/clm/src/clm4_5/main/iniTimeConst.F90
M models/lnd/clm/src/clm4_5/main/mkarbinitMod.F90
M models/lnd/clm/src/clm4_5/biogeophys/Hydrology2Mod.F90
- add/remove nl options for cryoturbation
M models/lnd/clm/bld/namelist_files/namelist_definition_clm4_5.xml
- cryoturbation
M models/lnd/clm/src/clm4_5/biogeochem/CNSoilLittVertTranspMod.F90
M models/lnd/clm/src/clm4_5/main/controlMod.F90
- variable consolidation
M models/lnd/clm/src/clm4_5/biogeochem/CNCStateUpdate2Mod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNGapMortalityMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNNStateUpdate1Mod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNNStateUpdate3Mod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNFireMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNCIsoFluxMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNSummaryMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNPhenologyMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNCStateUpdate1Mod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNDecompMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNCStateUpdate3Mod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNNStateUpdate2Mod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNSetValueMod.F90
M models/lnd/clm/src/clm4_5/main/CNiniTimeVar.F90
M models/lnd/clm/src/clm4_5/main/clmtypeInitMod.F90
M models/lnd/clm/src/clm4_5/main/pftdynMod.F90
M models/lnd/clm/src/clm4_5/main/clmtype.F90
M models/lnd/clm/src/clm4_5/main/histFldsMod.F90
Machines testing ran on: (Tests in priority order)
build-namelist unit tester: yes, two unexpected fails on comparison, should pass next time.
CESM test lists:
yellowstone/aux_clm intel yes
New expected failures:
all compare_hist tests with CLM45CN test should fail, but be ok next time (answer changes)
ERS_D.f10_f10.ICLM45CN4Me.nldir_ch4_set2_ciso - CFAIL - test needs to be updated to remove shape_fluxprof from namelist
ERS_D.f10_f10.ICLM45CN4Me.nldir_ch4_set3_pftroot - CFAIL - test needs to be updated to remove shape_fluxprof from namelist
PET_D_P1x30.ne30_g16.ICN - FAIL - runtime mpi abort from pio. fixed in pio-1.6.8?
SMS_RLA.f45_f45.I - FAIL - runtime mpi abort from pio. fixed in pio-1.6.8?
SMS_RLA.f45_f45.ICLM45 - FAIL - runtime mpi abort from pio. fixed in pio-1.6.8?
SMS_ROA.f45_f45.I - FAIL - runtime mpi abort from pio. fixed in pio-1.6.8?
SMS_ROA.f45_f45.ICLM45 - FAIL - runtime mpi abort from pio. fixed in pio-1.6.8?
yellowstone/aux_clm pgi yes
New expected failures:
all compare_hist tests with CLM45CN test should fail, but be ok next time (answer changes)
SMS_RLB.f45_f45.I - FAIL- runtime mpi abort from pio. fixed in pio-1.6.8?
SMS_RLB.f45_f45.ICLM45 - FAIL - runtime mpi abort from pio. fixed in pio-1.6.8?
frankfurt/aux_clm_int intel no
frankfurt/aux_clm intel no
test_driver.sh tools testing:
lynx interactive: no
yellowstone interactive: no
yellowstone/PTCLM: no
CLM tag used for the baseline comparison tests if applicable: clm4_0_80
Changes answers relative to baseline: yes
IF tag changes answers relative to baseline comparison the
following should be filled in:
Summarize any changes to answers, i.e.,
- what code configurations: CLM45, all CN and CN4Me compsets
- what platforms/compilers: all
- nature of change (roundoff; larger than roundoff/same climate; new climate):
variable consolidation - roundoff
cryoturbation - larger than roundoff/same climate
BSW - climate changing
If bitwise differences were observed, how did you show they were no worse
than roundoff?
If this tag changes climate describe the run(s) done to evaluate the new
climate (put details of the simulations in the experiment database):
This will change climate only in CN (not CN4Me mode), because of
the changed BSW (removal of incorrect second BSW formulation)
leading to slight differences in phenology. This has been fixed
in CN4Me for some time, and has not been observed to detrimentally
effect the climate in that configuration.
I (Charlie Koven) ran trunk tag 80 and the branch synced to tag 80 for
30 years at f19 resolution in I1850CLM45CN4Me compset, with AD spinup
turned on. I did not find sytematic differences in GPP or NEE. The
difference is that there was somewhat less passive pool carbon
mixed to the ~3m soil layer, and somewhat more accumulatin gin the
~2m layer; this is consistent with the changes to the
crypoturbation code, which sets a fixed depth of cryoturbation
throughout the permafrost region, instead of making it
proportional to active layer thickness.
URL for LMWG diagnostics output used to validate new climate: N/A
===============================================================
===============================================================
Tag name: clm4_0_80
Originator(s): erik (Erik Kluzek)
Date: Fri Apr 26 02:28:39 MDT 2013
One-line Summary: Bring Fang Li. Fire model into CLM4.5 science, update ALL CLM4.5 surface datasets,
provide a working initial condition file for CLM45BGC@f19_g16-1850
Purpose of changes: Bring the F. Li and S. Levis Fire model for CLMCN and CLMBGC based on
Li et al. (2012a,b; 2013). New data streams are added to bring in lightning frequency
(NASA-LIS climatology of 1995-2011 interpolated to T62) and human population density at half-degree
(currently from 1850 to 2010, no rcp data is available yet). Annual 1850–2010 population
density that is obtained by temporal linear interpolation of the data from HYDEv3.1
(prior to 1990) and GPWv3 (since 1990) at 0.5 degree resolution. GDP (Gross Domestic Product),
peat fraction, and maximum month for agricultural fires are also included on the
surface datasets. Fang Li tuned the fire model based on a branch version
(newfire05_clm45sci15_clm4_0_58) at f19_g16 resolution with CLMBGC for transient 1850-2000
with Qian atmosphere forcing. New fire fields are read in from the pft-physiology file.
ALL CLM4.5 surface datasets and pftdyn datasets were updated. ALL standard datasets
now have glc_nec=10 data on them and CAN be used for IG simulations with CISM for
10 glacier elevation classes. The standard way of running is still
with glc_nec=0. Surface datasets include data used by previous parameterizations added in CLM4.5:
ZWT0, F0, and P3 for the CLM4Me methane model
(PH can be read in on the surface dataset, but is NOT included on the current datasets)
LAKEDEPTH for the Subin variable depth lake model
(ETALAKE and LAKEFETCH can be read in, but are NOT included on the current datasets)
SLOPE, STD_ELEV for the Swenson dynamic wetlands parameterization
binfl, Ds, Dsmax, Ws for the optional VIC hydrology scheme (only read in when VIC active)
gdp, peatf, and abm for the new fire model above
(always read in although it wouldn't HAVE to be for CLMSP)
Also provide one working initial condition file for CLM45BGC at 1.9x2.5_gx1v6 resolution for 1850. This
will work for CLM45BGC (-vsoil_centbgc on) as long as the vertical carbon profiles are active. No other
initial condition files are provided at this time. This was from year 51 of a CLMBGC spinup simulation
by Fang Li with Qian forcing for 1850 (case qian_1850).
Bug fix, from Sam Levis so that non-irrigated prognostic crop for CLM4.5 works correctly. Previously
irrigated and non-irrigated crop for CLM4_5 gave the same results (with irrigation active even when
you told it NOT to be).
Also transient simulations are now allowed to be done with a cold start -- YOU SHOULD NEVER DO THIS FOR SCIENCE!
It does help facilitate testing however.
Requirements for tag:
Test level of tag: std-test
Bugs fixed (include bugzilla ID):
1670 (irrigated crop and non-irrigated crop for CLM45 give same answers)
Known bugs (include bugzilla ID):
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system: None
Describe any changes made to the namelist: New light_streams and popd_streams namelists for CLM
By default the light_stremas namelist runs over the NASA_LIS climatology data (3-hourly).
The population density namelist runs over the applicable years for the use_case given for the compset.
This can be customized with:
stream_year_first_popdens, stream_year_last_popdens, model_year_align_popdens
(and the filename and map-algorithm can be changed as well)
List any changes to the defaults for the boundary datasets: All surfdata, finidat, and pftdyn
datasets for clm4_5 were updated
Code reviewed by: self, slevis, fangli
List any svn externals directories updated (csm_share, mct, etc.): pio
pio to pio_1_6_7
List all files eliminated: None
List all files added and what they do: None
List all existing files that have been modified, and describe the changes:
M models/lnd/clm/bld/listDefaultNamelist.pl -- Get working for clm4_5.
M models/lnd/clm/bld/build-namelist ---------- check vsoilc_centbgc for finidat files, new light_streams and
popd_streams namelists for clm4_5
M models/lnd/clm/bld/namelist_files/namelist_defaults_clm4_5.xml --- all new fsurdat, fpftdyn datasets, settings
for new popd_streams and light_streams namelists
M models/lnd/clm/bld/namelist_files/namelist_definition_clm4_5.xml - Add new light_streams and popd_streams namelists
>>>>>>>>>>>> Set first and last pop-dens year, and do "arb_ic" rather than "startup"
>>>>>>>>>>>> type for all transient cases (allow transient cases to do a cold-start)
>>>>>>>>>>>> ALTHOUGH YOU SHOULD NEVER DO A COLD START FOR A TRANSIENT CASE!
M models/lnd/clm/bld/namelist_files/use_cases/2000_control.xml
M models/lnd/clm/bld/namelist_files/use_cases/20thC_glacierMEC_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/2000-2100_rcp8.5_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/2000_glacierMEC_control.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850_control.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp2.6_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp6_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp4.5_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp8.5_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/20thC_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850_glacierMEC_control.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp2.6_glacierMEC_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp6_glacierMEC_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp4.5_glacierMEC_transient.xml
M models/lnd/clm/bld/namelist_files/use_cases/1850-2100_rcp8.5_glacierMEC_transient.xml
>>>>>>>>>>>> Some small changes to documentation about irrigation.
M models/lnd/clm/doc/UsersGuide/preface.xml
M models/lnd/clm/doc/UsersGuide/custom.xml
M models/lnd/clm/src/util_share/ndepStreamMod.F90 -- make default private, namelist data private, and clm_domain_mct public
M models/lnd/clm/src/clm4_5/biogeochem/CNGapMortalityMod.F90 --- add number of individuals
M models/lnd/clm/src/clm4_5/biogeochem/CNNStateUpdate3Mod.F90 -- handle more impacts of fire
M models/lnd/clm/src/clm4_5/biogeochem/CNFireMod.F90 ----------- Fire module -- almost entirely replaced. Two new public
methods added:
+ public :: CNFireInit ! Initialization of CNFire
+ public :: CNFireInterp ! Interpolate fire data
M models/lnd/clm/src/clm4_5/biogeochem/CNSummaryMod.F90 -------- Handle more impacts of fire
M models/lnd/clm/src/clm4_5/biogeochem/CNCStateUpdate3Mod.F90 -- Handle more impacts of fire
M models/lnd/clm/src/clm4_5/biogeochem/CNrestMod.F90 ----------- burndate, lfc, wf, btran2, col_ctrunc, totsomc added to restart
old fire fields removed, _vr fields required if expected.,
M models/lnd/clm/src/clm4_5/biogeochem/CNEcosystemDynMod.F90 --- Add CNFireInit, and update CNFireArea call.
M models/lnd/clm/src/clm4_5/biogeochem/CNSetValueMod.F90 ------- Set fire variables.
M models/lnd/clm/src/clm4_5/biogeochem/CNVegStructUpdateMod.F90 farea_burned impacts SAI for stubble after harvest
M models/lnd/clm/src/clm4_5/main/CNiniTimeVar.F90 -------------- Initialize new fire variables
M models/lnd/clm/src/clm4_5/main/clm_initializeMod.F90 --------- Update CNEcosystemDynInit call
M models/lnd/clm/src/clm4_5/main/accFldsMod.F90 ---------------- Add prec10 and prec60 (10 and 60 day total precipitation)
M models/lnd/clm/src/clm4_5/main/clmtypeInitMod.F90 ------------ Initialize new fire variables.
M models/lnd/clm/src/clm4_5/main/pftdynMod.F90 ----------------- Update lf_conv_cflux, make PFT weight check same as for surfrdMod.F90
M models/lnd/clm/src/clm4_5/main/iniTimeConst.F90 -------------- Read in new fire data, abort if data needed NOT found on the
surface dataset.
M models/lnd/clm/src/clm4_5/main/findHistFields.pl ------------- Also read in CNFireMod for history fields.
M models/lnd/clm/src/clm4_5/main/clm_driver.F90 ---------------- Add CNFireInterp call.
M models/lnd/clm/src/clm4_5/main/CNiniSpecial.F90 -------------- Initialize lf_conv_cflux to zero.
M models/lnd/clm/src/clm4_5/main/pftvarcon.F90 ----------------- Read in new fire parameters
(no longer need "resist" on the pft-physiology file)
M models/lnd/clm/src/clm4_5/main/surfrdMod.F90 ----------------- Fix tolerances to match mksurdata_map
bug fix for non-irrigated crop.
M models/lnd/clm/src/clm4_5/main/clmtype.F90 ------------------- New fire fields
M models/lnd/clm/src/clm4_5/main/mkarbinitMod.F90 -------------- Initialize some new fire fields: tsoi17, fsat
M models/lnd/clm/src/clm4_5/main/histFldsMod.F90 --------------- New fire history fields
M models/lnd/clm/src/clm4_5/biogeophys/CanopyFluxesMod.F90 ----- Save btran2, smp_node_lf for fire
M models/lnd/clm/src/clm4_5/biogeophys/Hydrology2Mod.F90 ------- Save wf2, tsoi17, h2osoi_liqice_10cm
M models/lnd/clm/src/clm4_0/main/surfrdMod.F90 ----------------- Fix tolerances to match mksurdata_map
Machines testing ran on: (Tests in priority order)
build-namelist unit tester: yes
CESM test lists:
yellowstone/aux_clm intel yes
yellowstone/aux_clm pgi yes
frankfurt/aux_clm_int intel yes
frankfurt/aux_clm intel yes
test_driver.sh tools testing:
lynx interactive: no
yellowstone interactive: no
yellowstone/PTCLM: no
CLM tag used for the baseline comparison tests if applicable: clm4_0_79
Changes answers relative to baseline: YES!
Summarize any changes to answers:
- what code configurations: All with CLM45
- what platforms/compilers: All
- nature of change: new climate
If this tag changes climate describe the run(s) done to evaluate the new
climate (put details of the simulations in the experiment database)
/glade/p/cesm/lmwg/cases/cesm1/C20new -- on yellowstone
/glade/scratch/erik/archive/clm4079_NewFire10f19_CRU_20TR_CN4Me
/glade/scratch/erik/archive/clm4077_I1850CLM45CN4Me
/glade/scratch/erik/archive/clm4077_NewFire10f19_QIAN_20TR_CN4Me
hsi:/home/fangli/qian20
===============================================================
===============================================================
Tag name: clm4_0_79
Originator(s): muszala (Stefan Muszala,UCAR/CGD,303-497-1320)
Date: Wed Apr 24 20:27:01 MDT 2013
One-line Summary: pftdyn, pft-phys*.nc and datm8 update
Purpose of changes: From Erik:: - update Don't re-weight pftdyn if weights are essentially identical (Both CLM40 AND CLM45).
- Turn wasteheat to "ON" in CLM45. (namelist change) (done)
- Change from Sam Levis for CROP to pft-physiology file so that CROP parameter is in Kelvin rather than Celsius (both CLM40 and CLM45).
- Change datm so that LWDN is NOT read from files for CRUNCEP (datm8_130424).
Requirements for tag: fix bug 1621
Test level of tag: std-test
Bugs fixed (include bugzilla ID): fixed 1621
Known bugs (include bugzilla ID):
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system: N/A
Describe any changes made to the namelist: turn waste heat on in clm4_5
List any changes to the defaults for the boundary datasets: change pft-phys files for 4_0 and 4_5
Describe any substantial timing or memory changes: N/A
Code reviewed by: self, Erik, Dave Lawrence
List any svn externals directories updated (csm_share, mct, etc.):
< models/atm/datm https://svn-ccsm-models.cgd.ucar.edu/datm7/trunk_tags/datm8_130424
---
> models/atm/datm https://svn-ccsm-models.cgd.ucar.edu/datm7/trunk_tags/datm8_130325
List all files eliminated: N/A
List all files added and what they do: N/A
List all existing files that have been modified, and describe the changes:
M SVN_EXTERNAL_DIRECTORIES
update to datm8_130424
M models/lnd/clm/bld/namelist_files/namelist_defaults_clm4_0.xml
- $CSMDATA/lnd/clm2/pftdata/pft-physiology.clm40.c130424.nc
M models/lnd/clm/bld/namelist_files/namelist_defaults_clm4_5.xml
- change <urban_hac>ON_WASTEHEAT</urban_hac> to <urban_hac>ON</urban_hac>
- use $CSMDATA/lnd/clm2/pftdata/pft-physiology.c130424.nc
M models/lnd/clm/src/clm4_5/main/pftdynMod.F90
M models/lnd/clm/src/clm4_0/main/pftdynMod.F90
- change wtpfttot2 check
M models/lnd/clm/bld/unit_testers/xFail/expectedClmTestFails.xml
- syntax clean up - caught by Ben Andre
Machines testing ran on: (Tests in priority order)
build-namelist unit tester: OK. many expected failures due to new pft-physiology files. Should pass next time.
CESM test lists:
Many nlcomp failures:
clm4_5:
NEW: fpftcon = '/fs/cgd/csm/inputdata/lnd/clm2/pftdata/pft-physiology.c130424.nc'
BASELINE: fpftcon = '/fs/cgd/csm/inputdata/lnd/clm2/pftdata/pft-physiology.c121025.nc'
NEW: urban_hac = 'ON'
BASELINE: urban_hac = 'ON_WASTEHEAT'
clm4_0:
NEW: fpftcon = '/fs/cgd/csm/inputdata/lnd/clm2/pftdata/pft-physiology.clm40.c130424.nc'
BASELINE: fpftcon = '/fs/cgd/csm/inputdata/lnd/clm2/pftdata/pft-physiology.c110425.nc'
component_gen_comp: all PASS or BFAIL1
summarize_cprnc_diffs: differences in CLM files
yellowstone/CESM:
intel: OK. Expected failures for compare_hist (should pass next time)
FAIL ERS_D.f19_g16.IGRCP26CN.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
FAIL ERS_D.f19_g16.IRCP85CN.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
FAIL ERS_E.f19_g16.I1850CRUCLM45CN.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
FAIL ERS_Lm3.f19_g16.IGRCP60CN.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
FAIL NCK.f10_f10.ICRUCLM45.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
FAIL PET_PT.f10_f10.I20TRCN.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
FAIL SMS.f19_g16.IRCP45CN.yellowstone_intel.GC.222079.compare_hist.clm4_0_78
pgi : OK. Expected failures for compare_hist (should pass next time)
FAIL ERS_D.hcru_hcru.I_2000_CRUFRC_CLM45_CN.yellowstone_pgi.GC.111079.compare_hist.clm4_0_78
FAIL ERS_D.hcru_hcru.I_2000_CRUFRC_CN.yellowstone_pgi.GC.111079.compare_hist.clm4_0_78
FAIL PET_PT.f10_f10.I20TRCN.yellowstone_pgi.GC.111079.compare_hist.clm4_0_78
frankfurt/CESM:
intel: OK. Expected failures for compare_hist (should pass next time)
FAIL SMS.f10_f10.IRCP26CN.frankfurt_intel.GC.pft79.compare_hist.clm4_0_78
CLM tag used for the baseline comparison tests if applicable: clm4_0_78
Changes answers relative to baseline: yes
IF tag changes answers relative to baseline comparison the
following should be filled in:
Summarize any changes to answers, i.e.,
- what code configurations: all
- what platforms/compilers: all
- nature of change (roundoff; larger than roundoff/same climate; new climate): same climate
-in coupler history files: l2x_Sl_*, l2x_Fall, x2l_Slrr* and some r2x_* fields change
-in clm history files: for these tests only differences seen in IGRCP60CN
===============================================================
===============================================================
Tag name: clm4_0_78
Originator(s): muszala (Stefan Muszala,UCAR/CGD,303-497-1320)
Date: Tue Apr 23 19:25:18 MDT 2013
One-line Summary: MEGAN fixes
Purpose of changes:
- Bug fixes in MEGAN VOC emission fluxes and dry deposition velocities
- Remove the land fraction weighting from MEGAN history fields
- Added XPAN capability to dry deposition parametrization
Requirements for tag: N/A
Test level of tag: standard
Bugs fixed (include bugzilla ID): N/A
Known bugs (include bugzilla ID): N/A
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system: N/A
Describe any changes made to the namelist: N/A
List any changes to the defaults for the boundary datasets: N/A
Describe any substantial timing or memory changes: N/A
Code reviewed by: self, starting branch from Erik.
List any svn externals directories updated (csm_share, mct, etc.): N/A
List all files eliminated: N/A
List all files added and what they do: N/A
List all existing files that have been modified, and describe the changes:
M models/lnd/clm/bld/namelist_files/namelist_definition_clm4_0.xml
M models/lnd/clm/bld/namelist_files/namelist_definition_clm4_5.xml
- maximum string length of megan_specifier increased to 1024 characters
M models/lnd/clm/src/clm4_5/biogeochem/VOCEmissionMod.F90
M models/lnd/clm/src/clm4_0/biogeochem/VOCEmissionMod.F90
- land fraction weighting has been removed from the MEGAN diagnostics
- added initialization of the vocflx_meg array to zero to prevent
erroneous values from contributing to the MEGAN emissions
M models/lnd/clm/src/clm4_5/biogeochem/DryDepVelocity.F90
M models/lnd/clm/src/clm4_0/biogeochem/DryDepVelocity.F90
- corrected surface pressure
- added XPAN specification
Machines testing ran on: (Tests in priority order)
build-namelist unit tester: OK
yellowstone/CESM:
-intel: OK
-component_gen_comp fails on a number of tests, but it is all expected. summarize_cprnc_diffs verifies that all fails in the
CLM history files is consistent.
-compare_hist failures are expected due to new dry deposition values going through coupler.
-pgi : OK
-compare_hist failures are expected
frankfurt/CESM:
-intel: OK.
-compare_hist failures are expected
CLM tag used for the baseline comparison tests if applicable: clm4_0_77
Changes answers relative to baseline: Yes. Changes in l2x_Sl_dd{001-035},l2x_Sl_dd{040,041,043} in coupler hist file.
Possible changes in *_voc fields in coupler hist files for certain configurations. Changes in 10 MEG_* fields and VOCFLXT in CLM history files.
IF tag changes answers relative to baseline comparison the
following should be filled in:
Summarize any changes to answers, i.e.,
- what code configurations: All
- what platforms/compilers: All
- nature of change (roundoff; larger than roundoff/same climate; new climate): same climate. changes in CLM fields range from 1.e-9
(VOCFLXT) to 1.e-17 (MEG_thujene_a)
===============================================================
===============================================================
Tag name: clm4_0_77
Originator(s): sacks (Bill Sacks,UCAR/CGD,303-497-1762)
Date: Tue Apr 23 11:38:45 MDT 2013
One-line Summary: fix carbon balance bug in transient runs with VERTSOI, and fix Soil Hydrology bug
Purpose of changes:
Fix two bugs:
(1) In transient CLM45 runs with VERTSOI, a carbon balance error
occurred due to two routines being called with updated filters
when they should have been called with filters set at their values
from the previous time step. This bug has existed since clm4_0_62.
(2) A potential for an array out-of-bounds error (which could show up
as garbage results if array bounds checking was off) which showed
up in rare circumstances (e.g., a single grid cell in Greenland in
a 1-year test run)
Requirements for tag: Fix bugs 1663, 1664
Test level of tag: standard
Bugs fixed (include bugzilla ID):
1663 (array bounds error in SoilHydrologyMod)
1664 (carbon balance errors)
Known bugs (include bugzilla ID):
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system: None
Describe any changes made to the namelist: None
List any changes to the defaults for the boundary datasets: None
Describe any substantial timing or memory changes: None
Code reviewed by: self
List any svn externals directories updated (csm_share, mct, etc.): None
List all files eliminated: None
List all files added and what they do: None
List all existing files that have been modified, and describe the changes:
========= Fix for bug 1664
M models/lnd/clm/src/clm4_5/main/clm_driver.F90
========= Fix for bug 1663
M models/lnd/clm/src/clm4_5/biogeophys/SoilHydrologyMod.F90
Machines testing ran on: (Tests in priority order)
Standard Tag Pretag *** Standard Tag Posttag **
build-namelist unit tester: no
CESM test lists:
yellowstone/CESM: yes
All PASS or xFAIL; all component_gen_comp comparisons pass or BFAIL1
yellowstone/CESM/allIcompsets: no
frankfurt/CESM: yes
All PASS or xFAIL
test_system testing:
yellowstone batch: no
frankfurt interactive: no
yellowstone interactive: no
lynx batch: no
lynx interactive: no
frankfurt batch: no
test_driver.sh tools testing:
lynx interactive: no
yellowstone interactive: no
yellowstone/PTCLM: no
CLM tag used for the baseline comparison tests if applicable: clm4_0_76
Changes answers relative to baseline: YES, potentially (though none
observed in standard testing)
Answer changes are possible in any CLM45 case due to the SoilHydrology
bug fix (1663). This changes answers only in rare situations where the
water table comes near the surface (e.g., in a 1-year test run, this only
happened in one grid cell in Greenland)
In addition, the following answer changes are expected due to the fix for
bug 1664:
(1) CLM45 transient with VERTSOI (i.e., BGC). Implementing this change in
clm4_0_62 (the first tag that exhibited bug 1664), clm4_0_62-withFix
was identical to clm4_0_61 for this configuration. But clm4_0_77 will
differ from clm4_0_76 for this configuration.
(2) Answers are changed for CLM45 CNDV with VERTSOI (i.e., BGCDV). It
appears that this configuration was buggy before this tag (e.g.,
restarts weren't exact), so this tag changes answers in a way that
seems to fix this configuration.
If bitwise differences were observed, how did you show they were no worse
than roundoff? NOT DONE
If this tag changes climate describe the run(s) done to evaluate the new
climate (put details of the simulations in the experiment database)
- casename: N/A
URL for LMWG diagnostics output used to validate new climate: N/A
===============================================================
===============================================================
Tag name: clm4_0_76
Originator(s): muszala (Stefan Muszala)
Date: Mon Apr 22 13:36:26 MDT 2013
One-line Summary: spinup changes from Charlie Koven (part 1)
Purpose of changes:
Remove SPINUP CPP tokens, in favor of a run-time namelist item that can be set to
change the spinup mode on the fly. The state is stored on the restart file, and
if the user changes the mode on the namelist -- the model will automatically do
the "ENTER-SPINUP" or "EXIT-SPINUP" step as needed on the first time-step. The
spinup options were thus removed from the CLM configure for CLM45 and moved to
the build-namelist as option "-spinup" with values either "on" or "off".
Add new history fields: TOTLITC_1m, TOTSOMC_1m, TOTLITN_1m, and TOTSOMN_1m.
Remove the namelist item: reset_permafrost_c_n_pools. Removed default history
output for decomposing C pool changes due to vertical transport, and for vertical
profiles for N Deposition and fixation.
Answer Changes for C13: C13 and C13 Carbon isotopes are handled a bit differently
when they are NOT on the restart file. For C13 prior timestep's downregulation
is used in calculating ci used for photosynthetic discrimination. This changes
answers when use_c13 is turned on.
Requirements for tag: N/A
Test level of tag: std-tag
Bugs fixed (include bugzilla ID): N/A
Known bugs (include bugzilla ID): N/A
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system: Change the way spin up is handled
Describe any changes made to the namelist: spinup now controlled in build-namelist
List any changes to the defaults for the boundary datasets: N/A
Describe any substantial timing or memory changes: N/A
Code reviewed by: Dave L. checked spinup test comparing old and new method. Erik, Charlie Koven
List any svn externals directories updated (csm_share, mct, etc.):
-scripts https://svn-ccsm-models.cgd.ucar.edu/scripts/trunk_tags/scripts4_130416a
+scripts https://svn-ccsm-models.cgd.ucar.edu/scripts/trunk_tags/scripts4_130419a
List all files eliminated: N/A
List all files added and what they do:
List all existing files that have been modified, and describe the changes:
M models/lnd/clm/bld/build-namelist
M models/lnd/clm/src/clm4_5/main/clmtypeInitMod.F90
M models/lnd/clm/src/clm4_5/main/histFldsMod.F90
M models/lnd/clm/bld/configure
M models/lnd/clm/bld/config_files/config_definition.xml
M models/lnd/clm/bld/namelist_files/namelist_defaults_clm4_5.xml
M models/lnd/clm/bld/namelist_files/namelist_defaults_overall.xml
M models/lnd/clm/bld/namelist_files/namelist_definition_clm4_5.xml
M models/lnd/clm/src/clm4_5/biogeochem/CNDecompCascadeMod_BGC.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNSummaryMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNrestMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNDecompCascadeMod_CENTURY.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNEcosystemDynMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNSetValueMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNSoilLittVertTranspMod.F90
M models/lnd/clm/src/clm4_5/biogeochem/CNC14DecayMod.F90
M models/lnd/clm/src/clm4_5/main/clm_varcon.F90
M models/lnd/clm/src/clm4_5/main/CNiniTimeVar.F90
M models/lnd/clm/src/clm4_5/main/controlMod.F90
M models/lnd/clm/src/clm4_5/main/clm_varctl.F90
M models/lnd/clm/src/clm4_5/main/clm_driver.F90
M models/lnd/clm/src/clm4_5/main/clmtype.F90
M models/lnd/clm/src/clm4_5/biogeophys/BiogeophysRestMod.F90
M models/lnd/clm/src/clm4_5/biogeophys/CanopyFluxesMod.F90
M SVN_EXTERNAL_DIRECTORIES
Machines testing ran on: (Tests in priority order)
build-namelist unit tester: OK.
some new failures that should be gone when compared to the next tag. This is due to the new namelist variable
< spinup_state = 0
418/444 < FAIL> <Test Id: 418> <Desc: lnd_in file the same as expected for phys45>
423/444 < FAIL> <Test Id: 423> <Desc: lnd_in file the same as expected for phys45>
428/444 < FAIL> <Test Id: 428> <Desc: lnd_in file the same as expected for phys45>
433/444 < FAIL> <Test Id: 433> <Desc: lnd_in file the same as expected for phys45>
438/444 < FAIL> <Test Id: 438> <Desc: lnd_in file the same as expected for phys45>
443/444 < FAIL> <Test Id: 443> <Desc: lnd_in file the same as expected for phys45-crop>
CESM test lists:
yellowstone/CESM: SPM - tracking tputcomp failures
cesm intel: OK
FAIL ERS.f09_g16.ICLM45VIC.nldir_vic_vrtlay.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_D.f10_f10.I.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_D.f10_f10.ICLM45.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_D.f10_f10.ICLM45CN4Me.nldir_ch4_set2_ciso.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_D.f10_f10.ICLM45CN4Me.nldir_ch4_set3_pftroot.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_D.f10_f10.ICLM45CN4MeNoVS.nldir_rootlit.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_E.f19_g16.I1850.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
FAIL ERS_Lm3.f19_g16.IGRCP60CN.yellowstone_intel.GC.222075.tputcomp.clm4_0_74
cesm pgi : OK
FAIL SMS.1x1_numaIA.ICNCROP.yellowstone_pgi.GC.111075.tputcomp.clm4_0_74
frankfurt/CESM:
cesm intel: OK
FAIL ERS.f45_g37.I1850CN.frankfurt_intel.GC.00075.tputcomp.clm4_0_74
FAIL SMS.f10_f10.IRCP26CN.frankfurt_intel.GC.00075.tputcomp.clm4_0_74
FAIL SMS_D.1x1_mexicocityMEX.I.frankfurt_intel.GC.00075.tputcomp.clm4_0_74
CLM tag used for the baseline comparison tests if applicable: clm4_0_75
Changes answers relative to baseline: some changes
IF tag changes answers relative to baseline comparison the
following should be filled in:
Answer Changes for C13: C13 and C13 Carbon isotopes are handled a bit differently
when they are NOT on the restart file. For C13 prior timestep's downregulation
is used in calculating ci used for photosynthetic discrimination. This changes
answers when use_c13 is turned on.
===============================================================
===============================================================
Tag name: clm4_0_75
Originator(s): muszala (Stefan Muszala)
Date: Fri Apr 19 16:13:42 MDT 2013
One-line Summary: run propset
Purpose of changes: run propset so externals are updated
Requirements for tag:N/A
Test level of tag: critical
Bugs fixed (include bugzilla ID): N/A
Known bugs (include bugzilla ID): N/A
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system:N/A
Describe any changes made to the namelist:N/A
List any changes to the defaults for the boundary datasets: N/A
Describe any substantial timing or memory changes: N/A
Code reviewed by: self
List any svn externals directories updated (csm_share, mct, etc.): N/A
List all files eliminated: N/A
List all files added and what they do: N/A
List all existing files that have been modified, and describe the changes:N/A
Machines testing ran on: no testing run
===============================================================
===============================================================
Tag name: clm4_0_74
Originator(s): muszala (Stefan Muszala,UCAR/CGD,303-497-1320)
Date: Wed Apr 17 15:58:50 MDT 2013
One-line Summary: snow_depth changes, major scripts overhaul, small fix for tools
Purpose of changes: bring in snow_depth changes (bfb except for one field in clm hist files, SNOWDP)
update external to alpha06e and bring in scripts refactoring by mvertens. Bug fix for mksurfdata_map
by sacks. Some minor code cleanup by muszala.
Requirements for tag: N/A
Test level of tag: doc, std-test + tools
Bugs fixed (include bugzilla ID): N/A
Known bugs (include bugzilla ID): Bug in pio1_6_6 which kills mpi-serial runs, jedwards is working on fix.
http://bugs.cgd.ucar.edu/
Known Limitations:
1147 (mkgriddata can't straddle over Greenwich)
1025 (SCM mode can NOT use a global finidat file)
1017 (SCM mode can NOT restart)
896 (T62 mode does not work)
701 (svn keyword)
452 (Problem with support of soil-colors != 8 or 20)
Describe any changes made to build system: N/A
Describe any changes made to the namelist: N/A
List any changes to the defaults for the boundary datasets: N/A
Describe any substantial timing or memory changes: N/A
Code reviewed by: self, mvertens, swensoc
List any svn externals directories updated (csm_share, mct, etc.):
< scripts https://svn-ccsm-models.cgd.ucar.edu/scripts/trunk_tags/scripts4_130416a
> scripts https://svn-ccsm-models.cgd.ucar.edu/scripts/branch_tags/newcompsets2_tags/newcompsets2_02_scripts4_130405a
< scripts/ccsm_utils/Machines https://svn-ccsm-models.cgd.ucar.edu/Machines/trunk_tags/Machines_130412
> scripts/ccsm_utils/Machines https://svn-ccsm-models.cgd.ucar.edu/Machines/trunk_tags/Machines_130403
< models/drv https://svn-ccsm-models.cgd.ucar.edu/drv/seq_mct/trunk_tags/drvseq4_2_29
> models/drv https://svn-ccsm-models.cgd.ucar.edu/drv/seq_mct/trunk_tags/drvseq4_2_26
< models/utils/pio http://parallelio.googlecode.com/svn/trunk_tags/pio1_6_6/pio
> models/utils/pio http://parallelio.googlecode.com/svn/trunk_tags/pio1_6_5/pio
< tools/cprnc https://svn-ccsm-models.cgd.ucar.edu/tools/cprnc/trunk_tags/cprnc_130411
< tools/mapping https://svn-ccsm-models.cgd.ucar.edu/tools/mapping/trunk_tags/mapping_130403
> mapping https://svn-ccsm-models.cgd.ucar.edu/tools/mapping/trunk_tags/mapping_130308
< models/lnd/clm/tools/clm4_5/gen_domain https://svn-ccsm-models.cgd.ucar.edu/tools/mapping/trunk_tags/mapping_130403/gen_domain_files
> models/lnd/clm/tools/clm4_5/gen_domain https://svn-ccsm-models.cgd.ucar.edu/tools/mapping/trunk_tags/mapping_130308/gen_domain_files
List all files eliminated: models/lnd/clm/tools/SVN_EXTERNAL_DIRECTORIES (moved cprnc to common location).
List all files added and what they do: N/A
List all existing files that have been modified, and describe the changes:
SVN_EXTERNAL_DIRECTORIES
--small fix from sacks.
models/lnd/clm/tools/clm4_5/mksurfdata_map/src/mkglcmecMod.F90
models/lnd/clm/tools/clm4_0/mksurfdata_map/src/mkglcmecMod.F90
--update xFail list since we now run test_system tests out of cesm and scripts
--test_system now uses create_test
models/lnd/clm/test/system/test_system
models/lnd/clm/bld/unit_testers/xFail/expectedClmTestFails.xml
--minor clean up
models/lnd/clm/src/cpl_mct/lnd_comp_mct.F90
models/lnd/clm/src/util_share/organicFileMod.F90
models/lnd/clm/src/util_share/decompInitMod.F90
--snow depth changes
models/lnd/clm/src/clm4_5/biogeochem/ch4Mod.F90
models/lnd/clm/src/clm4_5/biogeochem/CNPhenologyMod.F90
models/lnd/clm/src/clm4_5/biogeochem/STATICEcosysDynMod.F90
models/lnd/clm/src/clm4_5/biogeochem/CNVegStructUpdateMod.F90
models/lnd/clm/src/clm4_5/main/initSurfAlbMod.F90
models/lnd/clm/src/clm4_5/main/clm_driver.F90
models/lnd/clm/src/clm4_5/main/inicPerpMod.F90
models/lnd/clm/src/clm4_5/main/clmtype.F90
models/lnd/clm/src/clm4_5/main/mkarbinitMod.F90
models/lnd/clm/src/clm4_5/main/clmtypeInitMod.F90
models/lnd/clm/src/clm4_5/main/histFldsMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SoilTemperatureMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SLakeFluxesMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SnowHydrologyMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SLakeHydrologyMod.F90
models/lnd/clm/src/clm4_5/biogeophys/Hydrology1Mod.F90
models/lnd/clm/src/clm4_5/biogeophys/BiogeophysRestMod.F90
models/lnd/clm/src/clm4_5/biogeophys/UrbanMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SLakeTemperatureMod.F90
models/lnd/clm/src/clm4_5/biogeophys/CanopyFluxesMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SurfaceRadiationMod.F90
models/lnd/clm/src/clm4_5/biogeophys/initSLakeMod.F90
models/lnd/clm/src/clm4_5/biogeophys/SurfaceAlbedoMod.F90
models/lnd/clm/src/clm4_5/biogeophys/Hydrology2Mod.F90
models/lnd/clm/src/clm4_5/biogeophys/SoilHydrologyMod.F90
models/lnd/clm/src/clm4_5/biogeochem/DryDepVelocity.F90
Machines testing ran on: (Tests in priority order)
build-namelist unit tester: OK.
CESM test lists: (this now includes tests from test_system batch from yellowstone).
yellowstone::
CESM intel: OK