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fix: Cycle detection bug in MONDO ontology #108

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berntpopp opened this issue Sep 4, 2024 · 0 comments
Open

fix: Cycle detection bug in MONDO ontology #108

berntpopp opened this issue Sep 4, 2024 · 0 comments
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@berntpopp
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Description:

There is a bug in the get_ontology function related to MONDO where a cycle is detected. The error occurs within the ancs_from_pars function, causing the process to fail. This needs investigation and resolution.

Error message:
```
Error in ancs_from_pars(int.parse, int.child, is) :
Cycle detected in ontology! See ancestors of;
```

Tasks:

  • Investigate the root cause of the cycle detection issue in MONDO.
  • Implement a solution to handle cycles in the ontology structure gracefully.
  • Add tests to ensure cycles are handled properly in future.
  • Update documentation with any relevant details.

Rationale:
Fixing this bug is crucial to ensure that ontology-based functionalities work correctly without crashing due to cycles in the ontology.

@berntpopp berntpopp added the bug Something isn't working label Sep 4, 2024
@berntpopp berntpopp self-assigned this Sep 4, 2024
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