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hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\nWrong repertory\r\n\r\n* Update modules_inclusion.nf\r\n\r\n* module load modif\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\nAdd conditions on db download\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\nremove channel.\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\nClassify_sh minor correction\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\nfastp correction\r\n\r\n* Update fastp.nf\r\n\r\nFastp v0.20.0 back\r\n\r\n* Update conda.config\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\ncan only be invoked from a workflow context\r\n\r\n* pilon input tuple\r\n\r\n* metafly refine correction\r\n\r\n* remove error with short / long reads\r\n\r\n* Medaka python 3.6 fix try\r\n\r\n* medaka modif\r\n\r\n* remove duplicate params.model\r\n\r\n* Update long.nf\r\n\r\nMedaka channel error\r\n\r\n* Update polish.nf\r\n\r\n* add ont-fast5-api\r\n\r\n* medaka update\r\n\r\n* medaka\r\n\r\n* medaka\r\n\r\n* medaka 1.11.3\r\n\r\n* conda\r\n\r\n* Medaka back to 1.0.3\r\n\r\n* medaka\r\n\r\n* medaka\r\n\r\n* medaka\r\n\r\n* Medaka\r\n\r\nreduce to 1 thread test\r\n\r\n* Update polish.nf\r\n\r\n* spades update\r\n\r\nOpenmp not available for conda channel\r\n\r\n* Update spades.nf\r\n\r\nmem format error correction\r\n\r\n* Update spades.nf\r\n\r\n* samtools conda label missing\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\nhdf5 modif\r\n\r\n* Update samtools_merger.nf\r\n\r\n* Update samtools_merger.nf\r\n\r\n* Update samtools_merger.nf\r\n\r\n* Update samtools_merger.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update main.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update metabat2.nf\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update nextflow.config\r\n\r\n* params update\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update hybrid.nf\r\n\r\n* checkm2\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update conda.config\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* bin tools conda\r\n\r\n* Update hybrid.nf\r\n\r\n* semibin\r\n\r\n* Update semibin2.nf\r\n\r\n* Update semibin2.nf\r\n\r\n* comebin\r\n\r\n* Update hybrid.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update quast.nf\r\n\r\n* Update comebin.nf\r\n\r\n* comebin up\r\n\r\n* come up\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update comebin.nf\r\n\r\n* Update sourmash.nf\r\n\r\n* comebin up\r\n\r\n* Update comebin.nf\r\n\r\n* add annotations part\r\n\r\n* Update hybrid.nf\r\n\r\n* Update eggnog.nf\r\n\r\n* Update eggnog.nf\r\n\r\n* Update eggnog.nf\r\n\r\n* Update eggnog.nf\r\n\r\n* back\r\n\r\n* Update metabat2.nf\r\n\r\n* Update metabat2.nf\r\n\r\n* up\r\n\r\n* queue add\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update metabat2.nf\r\n\r\n* Update sourmash.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* bin mod\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update sourmash.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* medaka up\r\n\r\n* Update polish.nf\r\n\r\nB in memory\r\n\r\n* Update checkm2.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update checkm2.nf\r\n\r\n* 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polish.nf\r\n\r\n* pilon mult\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* pilon mod\r\n\r\n* Update polish.nf\r\n\r\n* Update polish.nf\r\n\r\n* Update polish.nf\r\n\r\n* Update polish.nf\r\n\r\n* Update hybrid.nf\r\n\r\n* Global update\r\n\r\n- add process to get wrong bins\r\n- remove comment lines\r\n- rework n50 calculation in comebin\r\n- bining tools output update\r\n- channel handling modif.\r\n- metaquast process update\r\n- add pankegg_db python script\r\n\r\n* comebin n50 error correction\r\n\r\n* Update bins_tools.nf\r\n\r\n* Update bins_tools.nf\r\n\r\n* semibin publishdir up\r\n\r\n* Syntax error\r\n\r\n* Update semibin2.nf\r\n\r\n* comebin update & trinity memory 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