Environment

$ python -m venv .venv
$ source .venv/bin/activate
$ pip install --upgrade pip
$ pip install -r requirements.txt

Generating a List of Rare Diseases

Run the following to generate a list of rare diseases using ORDO ontology:

$ mkdir data
$ ./gen_rare_disease.py --ordo data/ORDO_en_4.2.owl --out data/rare_disease.txt