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adamyhe committed Feb 3, 2024
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# CLIPNET

CLIPNET (Convolutionally Learned, Initiation-Predicting NETwork) is an ensembled convolutional neural network that predicts transcription initiation from DNA sequence at single nucleotide resolution. A preprint describing CLIPNET will be available shortly on bioRxiv. This repository contains code for working with CLIPNET, namely for generating predictions and feature interpretations and performing *in silico* mutagenesis scans. Code to reproduce the figures in our paper will be made available separately.
CLIPNET (Convolutionally Learned, Initiation-Predicting NETwork) is an ensembled convolutional neural network that predicts transcription initiation from DNA sequence at single nucleotide resolution. A preprint describing CLIPNET will be available shortly on bioRxiv. This repository contains code for working with CLIPNET, namely for generating predictions and feature interpretations and performing *in silico* mutagenesis scans. To reproduce the figures in our paper, please see the [clipnet_paper GitHub repo](https://github.com/Danko-Lab/clipnet_paper/).

## Installation

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